Flow Cytometry: Publications

  • Burbage, M; Gasparrini, F; Aggarwal, S; Gaya, M; Arnold, J; Nair, U; Way, M; Bruckbauer, A and Batista, FD (2018)
    Tuning of in vivo cognate B-T cell interactions by Intersectin 2 is required for effective anti-viral B cell immunity.
    eLife 7, e26556 PubMed abstract
  • Claus, J; Patel, G; Autore, F; Colomba, A; Weitsman, G; Soliman, TN; Roberts, S; Zanetti-Domingues, LC; Hirsch, M; Collu, F; George, R; Ortiz-Zapater, E; Barber, PR; Vojnovic, B; Yarden, Y; Martin-Fernandez, ML; Cameron, A; Fraternali, F; Ng, T and Parker, PJ (2018)
    Inhibitor-induced HER2-HER3 heterodimerisation promotes proliferation through a novel dimer interface.
    eLife 7, e32271 PubMed abstract
  • Frye, M; Taddei, A; Dierkes, C; Martinez-Corral, I; Fielden, M; Ortsäter, H; Kazenwadel, J; Calado, DP; Ostergaard, P; Salminen, M; He, L; Harvey, NL; Kiefer, F and Mäkinen, T (2018)
    Matrix stiffness controls lymphatic vessel formation through regulation of a GATA2-dependent transcriptional program.
    Nature Communications 9, 1511 PubMed abstract
  • Gabryšová, L; Alvarez-Martinez, M; Luisier, R; Cox, LS; Sodenkamp, J; Hosking, C; Pérez-Mazliah, D; Whicher, C; Kannan, Y; Potempa, K; Wu, X; Bhaw, L; Wende, H; Sieweke, MH; Elgar, G; Wilson, M; Briscoe, J; Metzis, V; Langhorne, J; Luscombe, NM and O'Garra, A (2018)
    c-Maf controls immune responses by regulating disease-specific gene networks and repressing IL-2 in CD4+ T cells.
    Nature Immunology 19, 497-507 PubMed abstract
  • Gaya, M; Barral, P; Burbage, M; Aggarwal, S; Montaner, B; Warren Navia, A; Aid, M; Tsui, C; Maldonado, P; Nair, U; Ghneim, K; Fallon, PG; Sekaly, R-P; Barouch, DH; Shalek, AK; Bruckbauer, A; Strid, J and Batista, FD (2018)
    Initiation of antiviral B cell immunity relies on innate signals from spatially positioned NKT cells.
    Cell 172, 517-533 e520 PubMed abstract
  • Griessinger, E; Vargaftig, J; Horswell, S; Taussig, DC; Gribben, J and Bonnet, D (2018)
    Acute myeloid leukemia xenograft success prediction: saving time.
    Experimental Hematology 59, 66-71 e64 PubMed abstract
  • Hoogeboom, R; Natkanski, EM; Nowosad, CR; Malinova, D; Menon, RP; Casal, A and Tolar, P (2018)
    Myosin IIa promotes antibody responses by regulating B cell activation, acquisition of antigen, and proliferation.
    Cell Reports 23, 2342-2353 PubMed abstract
  • Ramachandran, A; Vizán, P; Das, D; Chakravarty, P; Vogt, J; Rogers, KW; Müller, P; Hinck, AP; Sapkota, GP and Hill, CS (2018)
    TGF-β uses a novel mode of receptor activation to phosphorylate SMAD1/5 and induce epithelial-to-mesenchymal transition.
    eLife 7, e31756 PubMed abstract
  • Schiering, C; Vonk, A; Das, S; Stockinger, B and Wincent, E (2018)
    Cytochrome P4501-inhibiting chemicals amplify aryl hydrocarbon receptor activation and IL-22 production in T helper 17 cells.
    Biochemical Pharmacology 151, 47-58 PubMed abstract
  • van der Veen, AG; Maillard, PV; Schmidt, JM; Lee, SA; Deddouche-Grass, S; Borg, A; Kjær, S; Snijders, AP and Reis e Sousa, C (2018)
    The RIG-I-like receptor LGP2 inhibits Dicer-dependent processing of long double-stranded RNA and blocks RNA interference in mammalian cells.
    EMBO Journal 37, e97479 PubMed abstract
  • Cossarizza, A; Chang, H-D; Radbruch, A; Andrä, I; Annunziato, F; Bacher, P; Barnaba, V; Battistini, L; Bauer, WM; Baumgart, S; Becher, B; Beisker, W; Berek, C; Blanco, A; Borsellino, G; Boulais, PE; Brinkman, RR; Büscher, M; Busch, DH; Bushnell, TP; Cao, X; Cavani, A; Chattopadhyay, PK; Cheng, Q; Chow, S; Clerici, M; Cooke, A; Cosma, A; Cosmi, L; Cumano, A; Dang, VD; Davies, D; De Biasi, S; Del Zotto, G; Della Bella, S; Dellabona, P; Deniz, G; Dessing, M; Diefenbach, A; Di Santo, J; Dieli, F; Dolf, A; Donnenberg, VS; Dörner, T; Ehrhardt, GRA; Endl, E; Engel, P; Engelhardt, B; Esser, C; Everts, B; Falk, CS; Fehniger, TA; Filby, A; Fillatreau, S; Follo, M; Förster, I; Foster, J; Foulds, GA; Frenette, PS; Galbraith, D; Garbi, N; García-Godoy, MD; Ghoreschi, K; Gibellini, L; Goettlinger, C; Goodyear, CS; Gori, A; Grogan, J; Gross, M; Grützkau, A; Grummitt, D; Hahn, J; Hammer, Q; Hauser, AE; Haviland, DL; Hedley, D; Herrera, G; Herrmann, M; Hiepe, F; Holland, T; Hombrink, P; Houston, JP; Hoyer, BF; Huang, B; Hunter, CA; Iannone, A; Jäck, H-M; Jávega, B; Jonjic, S; Juelke, K; Jung, S; Kaiser, T; Kalina, T; Keller, B; Khan, S; Kienhöfer, D; Kroneis, T; Kunkel, D; Kurts, C; Kvistborg, P; Lannigan, J; Lantz, O; Larbi, A; LeibundGut-Landmann, S; Leipold, MD; Levings, MK; Litwin, V; Liu, Y; Lohoff, M; Lombardi, G; Lopez, L; Lovett-Racke, A; Lubberts, E; Ludewig, B; Lugli, E; Maecker, HT; Martrus, G; Matarese, G; Maueröder, C; McGrath, M; McInnes, I; Mei, HE; Melchers, F; Melzer, S; Mielenz, D; Mills, K; Mjösberg, J; Moore, J; Moran, B; Moretta, A; Moretta, L; Mosmann, TR; Müller, S; Müller, W; Münz, C; Multhoff, G; Munoz, LE; Murphy, KM; Nakayama, T; Nasi, M; Neudörfl, C; Nolan, J; Nourshargh, S; O'Connor, J-E; Ouyang, W; Oxenius, A; Palankar, R; Panse, I; Peterson, P; Peth, C; Petriz, J; Philips, D; Pickl, W; Piconese, S; Pinti, M; Pockley, AG; Podolska, MJ; Pucillo, C; Quataert, SA; Radstake, TRDJ; Rajwa, B; Rebhahn, JA; Recktenwald, D; Remmerswaal, EBM; Rezvani, K; Rico, LG; Robinson, JP; Romagnani, C; Rubartelli, A; Ruland, J; Sakaguchi, S; Sala-de-Oyanguren, F; Samstag, Y; Sanderson, S; Sawitzki, B; Scheffold, A; Schiemann, M; Schildberg, F; Schimisky, E; Schmid, SA; Schmitt, S; Schober, K; Schüler, T; Schulz, AR; Schumacher, T; Scotta, C; Shankey, TV; Shemer, A; Simon, A-K; Spidlen, J; Stall, AM; Stark, R; Stehle, C; Stein, M; Steinmetz, T; Stockinger, H; Takahama, Y; Tarnok, A; Tian, Z; Toldi, G; Tornack, J; Traggiai, E; Trotter, J; Ulrich, H; van der Braber, M; van Lier, RAW; Veldhoen, M; Vento-Asturias, S; Vieira, P; Voehringer, D; Volk, H-D; von Volkmann, K; Waisman, A; Walker, R; Ward, MD; Warnatz, K; Warth, S; Watson, JV; Watzl, C; Wegener, L; Wiedemann, A; Wienands, J; Willimsky, G; Wing, J; Wurst, P; Yu, L; Yue, A; Zhang, Q; Zhao, Y; Ziegler, S and Zimmermann, J (2017)
    Guidelines for the use of flow cytometry and cell sorting in immunological studies.
    European Journal of Immunology 47, 1584-1797 PubMed abstract
  • Crockford, A; Zalmas, LP; Grönroos, E; Dewhurst, SM; McGranahan, N; Cuomo, ME; Encheva, V; Snijders, AP; Begum, J; Purewal, S; Cerveira, J; Patel, H; Renshaw, MJ and Swanton, C (2017)
    Cyclin D mediates tolerance of genome-doubling in cancers with functional p53.
    Annals of Oncology 28, 149-156 PubMed abstract
  • Di Tullio, A; Passaro, D; Rouault-Pierre, K; Purewal, S and Bonnet, D (2017)
    Nuclear factor erythroid 2 regulates human HSC self-renewal and T cell differentiation by preventing NOTCH1 activation.
    Stem Cell Reports 9, 5-11 PubMed abstract
  • Sanjuan Nandin, I; Fong, C; Deantonio, C; Torreno-Pina, JA; Pecetta, S; Maldonado, P; Gasparrini, F; Ordovas-Montanes, J; Kazer, SW; Kjaer, S; Borley, DW; Nair, U; Coleman, JA; Lingwood, D; Shalek, AK; Meffre, E; Poignard, P; Burton, DR and Batista, FD (2017)
    Novel in vitro booster vaccination to rapidly generate antigen-specific human monoclonal antibodies.
    Journal of Experimental Medicine 214, 2471-2490 PubMed abstract
  • Anjos-Afonso, F; Loizou, JI; Bradburn, A; Kanu, N; Purewal, S; Da Costa, C; Bonnet, D and Behrens, A (2016)
    Perturbed hematopoiesis in mice lacking ATMIN.
    Blood 128, 2017-2021 PubMed abstract
  • Barsky, LW; Black, M; Cochran, M; Daniel, BJ; Davies, D; DeLay, M; Gardner, R; Gregory, M; Kunkel, D; Lannigan, J; Marvin, J; Salomon, R; Torres, C and Walker, R (2016)
    International Society for Advancement of Cytometry (ISAC) flow cytometry shared resource laboratory (SRL) best practices.
    Cytometry A 89, 1017-1030 PubMed abstract
  • Blasi, T; Hennig, H; Summers, HD; Theis, FJ; Cerveira, J; Patterson, JO; Davies, D; Filby, A; Carpenter, AE and Rees, P (2016)
    Label-free cell cycle analysis for high-throughput imaging flow cytometry.
    Nature Communications 7, 10256 PubMed abstract
  • Filby, A; Day, W; Purewal, S and Martinez-Martin, N (2016)
    The analysis of cell cycle, proliferation, and asymmetric cell division by imaging flow cytometry.
    Methods in Molecular Biology 1389, 71-95 PubMed abstract
  • Griessinger, E; Anjos-Afonso, F; Vargaftig, J; Taussig, DC; Lassailly, F; Prebet, T; Imbert, V; Nebout, M; Vey, N; Chabannon, C; Filby, A; Bollet-Quivogne, F; Gribben, JG; Peyron, J-F and Bonnet, D (2016)
    Frequency and dynamics of leukemia-initiating cells during short-term ex-vivo culture informs outcomes in acute myeloid leukemia patients.
    Cancer Research 76, 2082-2086 PubMed abstract
  • Johnston, AC; Piro, A; Clough, B; Siew, M; Virreira Winter, S; Coers, J and Frickel, E-M (2016)
    Human GBP1 does not localize to pathogen vacuoles but restricts Toxoplasma gondii.
    Cellular Microbiology 18, 1056-1064 PubMed abstract
  • Pelly, VS; Kannan, Y; Coomes, SM; Entwistle, LJ; Rückerl, D; Seddon, B; MacDonald, AS; McKenzie, A and Wilson, MS (2016)
    IL-4-producing ILC2s are required for the differentiation of TH2 cells following Heligmosomoides polygyrus infection.
    Mucosal Immunology 9, 1407-1417 PubMed abstract
  • Perez-Lloret, J; Okoye, IS; Guidi, R; Kannan, Y; Coomes, SM; Czieso, S; Mengus, G; Davidson, I and Wilson, MS (2016)
    T-cell-intrinsic Tif1α/Trim24 regulates IL-1R expression on TH2 cells and TH2 cell-mediated airway allergy.
    Proceedings of the National Academy of Sciences of the United States of America 113, E568-E576 PubMed abstract
  • Cerveira, J; Begum, J; Di Marco Barros, R; van der Veen, AG and Filby, A (2015)
    An imaging flow cytometry-based approach to measuring the spatiotemporal calcium mobilisation in activated T cells.
    Journal of Immunological Methods 423, 120-130 PubMed abstract
  • Coomes, SM; Pelly, VS; Kannan, Y; Okoye, IS; Czieso, S; Entwistle, LJ; Perez-Lloret, J; Nikolov, N; Potocnik, AJ; Biró, J; Langhorne, J and Wilson, MS (2015)
    IFNγ and IL-12 restrict Th2 responses during helminth/Plasmodium co-infection and promote IFNγ from Th2 cells.
    PLOS Pathogens 11, e1004994 PubMed abstract
  • Davies, D and O'Toole, P (2015)
    Guest Editor's introduction.
    Methods 82, 1-2 PubMed abstract
  • Filby, A; Begum, J; Jalal, M and Day, W (2015)
    Appraising the suitability of succinimidyl and lipophilic fluorescent dyes to track proliferation in non-quiescent cells by dye dilution.
    Methods 82, 29-37 PubMed abstract
  • Patterson, JO; Swaffer, M and Filby, A (2015)
    An Imaging Flow Cytometry-based approach to analyse the fission yeast cell cycle in fixed cells.
    Methods 82, 74-84 PubMed abstract
  • Ahlfors, H; Morrison, PJ; Duarte, JH; Li, Y; Biro, J; Tolaini, M; Di Meglio, P; Potocnik, AJ and Stockinger, B (2014)
    IL-22 fate reporter reveals origin and control of IL-22 production in homeostasis and infection.
    Journal of Immunology 193, 4602-4613 PubMed abstract
  • Andersen, J; Urbán, N; Achimastou, A; Ito, A; Simic, M; Ullom, K; Martynoga, B; Lebel, M; Göritz, C; Frisén, J; Nakafuku, M and Guillemot, F (2014)
    A transcriptional mechanism integrating inputs from extracellular signals to activate hippocampal stem cells.
    Neuron 83, 1085-1097 PubMed abstract
  • Di Meglio, P; Duarte, JH; Ahlfors, H; Owens, NDL; Li, Y; Villanova, F; Tosi, I; Hirota, K; Nestle, FO; Mrowietz, U; Gilchrist, MJ and Stockinger, B (2014)
    Activation of the aryl hydrocarbon receptor dampens the severity of inflammatory skin conditions.
    Immunity 40, 989-1001 PubMed abstract
  • Hartweger, H; Schweighoffer, E; Davidson, S; Peirce, MJ; Wack, A and Tybulewicz, VLJ (2014)
    Themis2 is not required for B cell development, activation, and antibody responses.
    Journal of Immunology 193, 700-707 PubMed abstract
  • Ng, DHL; Skehel, JJ; Kassiotis, G and Langhorne, J (2014)
    Recovery of an antiviral antibody response following attrition caused by unrelated infection.
    PLOS Pathogens 10, e1003843 PubMed abstract
  • Okoye, IS; Coomes, SM; Pelly, VS; Czieso, S; Papayannopoulos, V; Tolmachova, T; Seabra, MC and Wilson, MS (2014)
    MicroRNA-containing T-regulatory-cell-derived exosomes suppress pathogenic T helper 1 cells.
    Immunity 41, 89-103 PubMed abstract
  • Okoye, IS; Czieso, S; Ktistaki, E; Roderick, K; Coomes, SM; Pelly, VS; Kannan, Y; Perez-Lloret, J; Zhao, JL; Baltimore, D; Langhorne, J and Wilson, MS (2014)
    Transcriptomics identified a critical role for Th2 cell-intrinsic miR-155 in mediating allergy and antihelminth immunity.
    Proceedings of the National Academy of Sciences of the United States of America 111, E3081-E3090 PubMed abstract
  • Sage, EK; Kolluri, KK; McNulty, K; Lourenco, SDS; Kalber, TL; Ordidge, KL; Davies, D; Gary Lee, YC; Giangreco, A and Janes, SM (2014)
    Systemic but not topical TRAIL-expressing mesenchymal stem cells reduce tumour growth in malignant mesothelioma.
    Thorax 69, 638-647 PubMed abstract
  • Sarbajna, S; Davies, D and West, SC (2014)
    Roles of SLX1-SLX4, MUS81-EME1, and GEN1 in avoiding genome instability and mitotic catastrophe.
    Genes & Development 28, 1124-1136 PubMed abstract
  • Thorborn, G; Ploquin, MJ; Eksmond, U; Pike, R; Bayer, W; Dittmer, U; Hasenkrug, KJ; Pepper, M and Kassiotis, G (2014)
    Clonotypic composition of the CD4+ T cell response to a vectored retroviral antigen is determined by its speed.
    Journal of Immunology 193, 1567-1577 PubMed abstract
  • Begum, J; Day, W; Henderson, C; Purewal, S; Cerveira, J; Summers, H; Rees, P; Davies, D and Filby, A (2013)
    A method for evaluating the use of fluorescent dyes to track proliferation in cell lines by dye dilution.
    Cytometry A 83, 1085-1095 PubMed abstract
  • Kiaii, S; Clear, AJ; Ramsay, AG; Davies, D; Sangaralingam, A; Lee, A; Calaminici, M; Neuberg, DS and Gribben, JG (2013)
    Follicular lymphoma cells induce changes in T-cell gene expression and function: potential impact on survival and risk of transformation.
    Journal of Clinical Oncology 31, 2654-2661 PubMed abstract
  • Li, NF; Gemenetzidis, E; Marshall, FJ; Davies, D; Yu, Y; Frese, K; Froeling, FEM; Woolf, AK; Feakins, RM; Naito, Y; Iacobuzio-Donahue, C; Tuveson, DA; Hart, IR and Kocher, HM (2013)
    RhoC interacts with integrin α5β1 and enhances its trafficking in migrating pancreatic carcinoma cells.
    PLOS ONE 8, e81575 PubMed abstract
  • McNab, FW; Ewbank, J; Rajsbaum, R; Stavropoulos, E; Martirosyan, A; Redford, PS; Wu, X; Graham, CM; Saraiva, M; Tsichlis, P; Chaussabel, D; Ley, SC and O'Garra, A (2013)
    TPL-2-ERK1/2 signaling promotes host resistance against intracellular bacterial infection by negative regulation of type I IFN production.
    Journal of Immunology 191, 1732-1743 PubMed abstract
  • Schraml, BU; van Blijswijk, J; Zelenay, S; Whitney, PG; Filby, A; Acton, SE; Rogers, NC; Moncaut, N; Carvajal, JJ and Reis e Sousa, C (2013)
    Genetic tracing via DNGR-1 expression history defines dendritic cells as a hematopoietic lineage.
    Cell 154, 843-858 PubMed abstract
  • Abdullah Thani, NA; Sallis, B; Nuttall, R; Schubert, FR; Ahsan, M; Davies, D; Purewal, S; Cooper, A and Rooprai, HK (2012)
    Induction of apoptosis and reduction of MMP gene expression in the U373 cell line by polyphenolics in Aronia melanocarpa and by curcumin.
    Oncology Reports 28, 1435-1442 PubMed abstract
  • Davies, D (2012)
    Cell separations by flow cytometry.
    Methods in Molecular Biology 878, 185-199 PubMed abstract
  • Filby, A and Davies, D (2012)
    Reporting imaging flow cytometry data for publication: why mask the detail?
    Cytometry A 81, 637-642 PubMed abstract
  • Mallucci, L; Shi, D-y; Davies, D; Jordan, P; Nicol, A; Lotti, L; Mariani-Costantini, R; Verginelli, F; Wells, V and Zicha, D (2012)
    Killing of Kras-mutant colon cancer cells via Rac-independent actin remodeling by the βGBP cytokine, a physiological PI3K inhibitor therapeutically effective in vivo.
    Molecular Cancer Therapeutics 11, 1884-1893 PubMed abstract
  • Thaunat, O; Granja, AG; Barral, P; Filby, A; Montaner, B; Collinson, L; Martinez-Martin, N; Harwood, NE; Bruckbauer, A and Batista, FD (2012)
    Asymmetric segregation of polarized antigen on B cell division shapes presentation capacity.
    Science 335, 475-479 PubMed abstract
  • Urry, Z; Chambers, ES; Xystrakis, E; Dimeloe, S; Richards, DF; Gabryšová, L; Christensen, J; Gupta, A; Saglani, S; Bush, A; O'Garra, A; Brown, Z and Hawrylowicz, CM (2012)
    The role of 1α,25-dihydroxyvitamin D3 and cytokines in the promotion of distinct Foxp3+and IL-10+ CD4+T cells.
    European Journal of Immunology 42, 2697-2708 PubMed abstract
  • Filby, A; Perucha, E; Summers, H; Rees, P; Chana, P; Heck, S; Lord, GM and Davies, D (2011)
    An imaging flow cytometric method for measuring cell division history and molecular symmetry during mitosis.
    Cytometry A 79, 496-506 PubMed abstract
  • Gabryšová, L; Christensen, JR; Wu, X; Kissenpfennig, A; Malissen, B and O'Garra, A (2011)
    Integrated T-cell receptor and costimulatory signals determine TGF-β-dependent differentiation and maintenance of Foxp3+ regulatory T cells.
    European Journal of Immunology 41, 1242-1248 PubMed abstract
  • Gandillet, A; Park, S; Lassailly, F; Griessinger, E; Vargaftig, J; Filby, A; Lister, TA and Bonnet, D (2011)
    Heterogeneous sensitivity of human Acute Myeloid Leukemia to β-catenin down-modulation.
    Leukemia 25, 770-780 PubMed abstract
  • Belyaev, NN; Brown, DE; Diaz, AIG; Rae, A; Jarra, W; Thompson, J; Langhorne, J and Potocnik, AJ (2010)
    Induction of an IL7-R+c-Kithi myelolymphoid progenitor critically dependent on IFN-γ signaling during acute malaria.
    Nature Immunology 11, 477-485 PubMed abstract
  • Taussig, DC; Vargaftig, J; Miraki-Moud, F; Griessinger, E; Sharrock, K; Luke, T; Lillington, D; Oakervee, H; Cavenagh, J; Agrawal, SG; Lister, TA; Gribben, JG and Bonnet, D (2010)
    Leukemia-initiating cells from some acute myeloid leukemia patients with mutated nucleophosmin reside in the CD34- fraction.
    Blood 115, 1976-1984 PubMed abstract

[Page last updated 1 Jun 2018]

Derek Davies

Derek Davies (Lead) 

020 379 61697

Graham Preece (Assistant)