Messenger RNAs (mRNA) are linear molecules that contain instructions for producing the proteins that keep living cells functioning.
A new study by researchers from UCL and Cancer Research UK's London Research Institute (now the Francis Crick Institute) has shown how the three-dimensional structures of mRNAs determine their stability and efficiency inside cells.
This new knowledge could help to explain how seemingly minor mutations that alter mRNA structure might cause things to go wrong in neurodegenerative diseases like Alzheimer's.
mRNAs carry genetic information from DNA to be translated into proteins. They are generated as long chains of molecules, but they fold up into complex structures by making connections between different sections of the chain. Despite the importance of these structures to how mRNAs function, very little was known about them until now.
The study reports a new technique allowing scientists to identify connections that hook sections of an mRNA together. "We were amazed to find that mRNAs make thousands of connections inside living cells", said Professor Jernej Ule of UCL (University College London) who led the research with Dr Nicholas Luscombe of UCL and Cancer Research UK's London Research Institute. "Sometimes these connections hook together very distant parts of mRNA molecules."
Further investigation showed that these connections affect how mRNAs interact with other molecules inside cells, and so influence how much protein they eventually produce.
A particularly important connection is found in an mRNA that codes for a protein called X-box binding protein 1.
"This protein enables our cells respond to stress. The amount of this protein in cells is tightly controlled, but when this control is lost, it can contribute to neurodegenerative diseases such as Alzheimer's," explained Yoichiro Sugimoto, who was a PhD student with Ule at the Medical Research Council's Laboratory of Medical Biology in Cambridge. "The connection we found in the mRNA helps to ensure that the right amount of protein is produced."
Genetic mutations in mRNAs can lead to faulty connections and cause the wrong amounts of protein to be produced. This suggests that a wide range of human diseases could be caused by such mutations. "The NHS's 100,000 Genomes Project is helping us discover where potentially harmful mutations happen in the human genome," said Dr Luscombe. "Finding those mutations that impact mRNA structure will help us understand why things go wrong in diseases like Alzheimer's and cancer."
"This has great potential!" adds Professor Ule. "Because understanding the genetic cause is the first step towards finding new ways to treat these diseases."
The paper, hiCLIP reveals the in vivo atlas of mRNA secondary structures recognized by Staufen 1, is published in Nature.